spike-in-normalization

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gynecoloji / snakemake_ATACseq_spikein

Reproducible Snakemake workflow for spike-in–normalized ATAC-seq — concatenated-genome alignment, MACS2 peaks, a consensus fragment-count matrix, an interactive QC report, and DESeq2 differential binding. Docker/Apptainer-ready.

docker bioinformatics snakemake reproducible-research deseq2 atac-seq epigenomics atacseq peak-calling deeptools apptainer differential-binding spike-in-normalization

Updated Aug 3, 2026
Python

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