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spatioloji_s
spatioloji_s PublicPython toolkit for image-based spatial transcriptomics (CosMx, MERFISH, Xenium). Unified data object for expression, polygons, and FOV images, plus QC, clustering, point- and polygon-based spatial …
Python 1
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snakemake_RNAseq
snakemake_RNAseq PublicContainerized Snakemake workflow for RNA-seq: HISAT2 + featureCounts gene counts, Salmon transcript quantification, and comprehensive QC (FastQC, fastp, Picard, Qualimap, RSeQC, MultiQC). On-demand…
Python 1
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