An analysis pipeline for Nanostring nCounter expression data.

NAnostring quality Control dasHbOard.

Install the GeoMxNGSPipeline_Linux_2.0.0.16 tool from Nanostring/illumina to docker container, and convert it to Singularity.

Python pipeline for Nanostring nCounter gene expression analysis — parse, QC, normalize, DE, pathway scoring

A web app for easier NanoString gene expression analysis

R package for analysis of NanoString data

This repository contains the two R scripts used in the paper titled Treg fitness as a biomarker for disease activity in Juvenile Idiopathic Arthritis by M. H. Attrill et al. 2025.

Analyses for the manuscript modeling LASV Nigeria 0043 small particle aerosol infection in AGMs

Targeted transcriptomic and proteomic analysis data and code

NanostrIng MB cLassifiEr

Transcriptomic analysis data and code

Analysing single-cell and DSP data to test the effect of copper chelation with TEPA in Neuroblastoma mice

NanoString classifier based on NGS training set

Multimodal profiling data and analysis code for HER2/neu-specific TCR-T cells, enabling comparative analysis of distinct TCR clonotypes and their activation programs underlying differential cytotoxic efficacy.

Nanostring analyses for the Connor & Geisbert lab manuscript describing a LASV infection model in AGMs

Nanostring analyses for the Geisbert lab manuscript describing treatment of LASV in AGMs using 4' FIU antiviral