Leave low-scoring MAPQ 0 reads unmapped - #4916

Merged

adamnovak merged 10 commits into

Jun 2, 2026

Commits on May 27, 2026

add new filter
faithokamoto
committed
e8274c2
Merge branch 'master' into mapq0-score
faithokamoto
committed
fc19ee5
oops
faithokamoto
committed
0f260b2

Commits on May 28, 2026

need to grab the correct mapping to fail/pass
faithokamoto
committed
196828d
oh yeah hide that
faithokamoto
committed
d189bf8

Commits on May 29, 2026

set up separate stage
faithokamoto
committed
28de3b9
stage not substage
faithokamoto
committed
7059ea2
fix doc
faithokamoto
committed
f6d44e5

Commits on Jun 1, 2026

Only project when passign de demapping stage
adamnovak
committed
4b3e2ec
xfail the test that hates the new runners until we can fix it
adamnovak
committed
201c5b8