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sequence-quality

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A small, dependency-free command-line tool (and Python library) for cleaning and filtering FASTA sequence files. It strips gaps and whitespace, drops sequences that are too short, too long, malformed, or below a valid-character threshold, optionally removes duplicate identifiers, and writes tidy, line-wrapped FASTA output, along with a report.

  • Updated Jul 16, 2026
  • Python

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