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mtbc

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gmboowa / rMAP-TB

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A robust, Dockerized WDL/Cromwell workflow for Mycobacterium tuberculosis complex genomic surveillance, integrating read trimming, QC, species typing, TB-Profiler resistance & lineage profiling, NTM/MTBC identification, mutation evidence reporting, core-SNP phylogenomics, SNP distance analysis & interactive HTML reporting for TB AMR surveillance.

transmission bioinformatics-pipeline phylogenomics cromwell drug-resistance mycobacterium-tuberculosis-complex wdl-workflow tuberculosis-genomics mtbc drug-resistance-surveillance nontuberculosis-mycobacterium
  • Updated Jul 14, 2026
  • WDL

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