API for linked biological knowledge

PyINE is a research framework for scalable elicitation and oversight of LLM reasoning, built on instrumented Python programs as a verifiable execution substrate.

Saccharomyces cerevisiae information, gene calling and ORF identification assistant

Clinical Measurement Ontology (CMO) maintained by RGD

Synthetic-document fine-tuning on Qwen2.5-7B: a controlled study of whether SDF installs sandbagging, finding a layered recognition/generation/behavior dissociation.

Experimental Condition Ontology maintained by RGD

Analyses for "Diverse logics and grammar encode notochord enhancers" study to be featured in Cell Reports

Code and raw data for *Galaxea fascicularis* microbiome data analysis

Measurement method ontology maintained by RGD

A Defense-in-Depth AI Control Sandbox using Docker, seccomp-bpf, and Paraphrasing to neutralize Model Organisms of Deception

Electrophysiological analysis and contraction pulse (CP) sorting from MEA recordings in Hydra vulgaris

Emergent Misalignmently misaligned or confidently incorrect? Studied if these models are too incapable to be harmful. 3rd / 8, ARENA 7.0 Capstone

A structured model and likelihood approach to estimate yeast prion propagon replication rates and their asymmetric transmission

A production-grade 7-node autonomous agent DAG with fail-closed safety, O-R-A-V semantic evaluation, and a self-improving RL data flywheel.