Dictionary of Functional Modes for brain imaging
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Feb 1, 2021 - HTML
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brain-atlas
Here are 20 public repositories matching this topic...
GNU R package for reading and writing neuroimaging file formats. Not limited to FreeSurfer anymore, despite its name.
r research label voxel mri mesh neuroimaging brain surface parcellation dti freesurfer brain-atlas mgh brain-surfaces fileformats curv
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Jul 8, 2026 - R
Search, download, and prepare brain atlas data.
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Mar 10, 2023 - Python
A neuroanatomy-based augmented reality experience powered by OpenCV. Features 3D visuals of the Atlas Brain Map slices with real-time ArUco marker detection.
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Jun 16, 2021 - Python
A simple Python-based tool for finding brain atlas regions based on MNI coordinates.
python neuroscience python3 neuroimaging brain-imaging mni brain-regions brain-atlas aal brain-visualization aal3
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Jun 22, 2026 - Python
BBP domains specification (schemas, vocabularies)
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May 18, 2022 - Scala
LocareJSON is a collection of JSON schemas for defining geometrical shapes with coordinates in 3D brain atlas coordinate spaces.
neuroscience-methods spatial-search brain-atlas coordinate-reference-systems data-integration-framework
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Oct 24, 2023 - Python
Code repository for automatic retrieval and registration of rodent brain atlases
feature-detection segmentation harris-corners image-registration image-retrieval feature-matching speeded-up-robust-features brain-atlas
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Feb 22, 2019 - Jupyter Notebook
Brain tissue segmentation using several algorithms: EM, Atlas-based methods, nnunet
medical-imaging expectation-maximization segmentation image-segmentation semantic-segmentation brain-atlas brain-tissue-segmentation nnunet
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Jul 25, 2023 - Python
Automatic annotation of cell identities in dense cellular images.
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Jun 23, 2021 - MATLAB
Use vision-language models to perform alignment and registration of histological brain sections to any BrainGlobe atlas in any orientation plane.
neuroscience image-registration gemma histology tauri brain-atlas vision-language-model brainglobe gemma-4
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Jun 3, 2026 - Python
a web-based 3D tool to register brain MRI volumes to the Marmoset Brain Atlas
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Apr 18, 2023 - TypeScript
a web-based 2D high-resolution brain image viewer
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Dec 22, 2023 - JavaScript
Pairwise Brain Atlas Construction (BAtCh) HTCondor/SLURM workflow
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Jul 20, 2020 - Shell
A Python tool for mapping electrophysiology recording sites onto standardized mouse brain coordinates. Supports coronal, axial, and sagittal views with rapid visualization of electrophysiological data and anatomical locations.
python neuroscience data-visualization electrophysiology mouse-brain neurophysiology brain-atlas brain-mapping electrode-localization scientific-tools recording-sites coronal-sections brain-coordinates
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Sep 16, 2025 - Python
Brain/MINDS Marmoset Brain Atlas Viewer made using Unity engine
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Oct 7, 2022 - C#
Interactive 3D brain learning app with search, citations, and quiz mode
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Jun 24, 2026 - TypeScript
One-prompt 3D brain-region figures & rotating glow animations from 200+ BrainGlobe atlases (any species), rendered headless in Blender. A low-token Claude Code skill.
blender animation neuroscience data-visualization scientific-visualization 3d-visualization neuroanatomy claude brain-atlas brainglobe claude-code claude-skill
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Jun 24, 2026 - Python
GWIQ-Atlas: is a brain-atlasing and model-interpretability suite that combines per-layer census, compliance behaviour tracing, SAE features, and quantization analyses for LLMs.
python transformers quantization sae sparse-autoencoder brain-atlas huggingface activation-analysis mechanistic-interpretability llm-analysis llm-quantization llm-interpretability model-atlas feature-census
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Jul 8, 2026 - Python
Analyze mobile network signals in real time with Cell-ID for detailed insight into signal strength, cell history, and network parameters across devices.
javascript python postgis s2 cbc knn iou rbc postgis-extension brain-atlas crf-model automated-diagnosis sc-nygc-jan2020 platelets blood-cell-detection
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Jul 13, 2026 - HTML
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