1.11.2

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Add PIE and B lints

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3573

#3573 In scverse/scanpy;

· by flying-sheep was closed on Apr 10, 2025

Backport PR #3553 on branch 1.11.x (Deduplicate graph metrics)

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3559

#3559 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 4, 2025

Backport PR #3556 on branch 1.11.x (Switch to CSBase)

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3561

#3561 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 4, 2025

Backport PR #3566 on branch 1.11.x ([pre-commit.ci] pre-commit autoupdate)

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3569

#3569 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 8, 2025

Switch to CSBase

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3556

#3556 In scverse/scanpy;

· by flying-sheep was closed on Apr 4, 2025

Backport PR #3549 on branch 1.11.x (Update CI and download badges in README)

Area - Documentation 📒

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3550

#3550 In scverse/scanpy;

· by meeseeksmachine was closed on Mar 31, 2025

Update CI and download badges in README

Area - Documentation 📒

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3549

#3549 In scverse/scanpy;

· by flying-sheep was closed on Mar 31, 2025

Backport PR #3582 on branch 1.11.x (Add RUF lints)

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3583

#3583 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 11, 2025

Add RUF lints

Development Process 🚀

needs retroactive reviewThis PR has been merged but could use some eyes on itThis PR has been merged but could use some eyes on it

Status: Merged (completed).

scverse/scanpynumber 3582

#3582 In scverse/scanpy;

· by flying-sheep was closed on Apr 11, 2025

Backport PR #3577 on branch 1.11.x (Add Pylint lints)

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3578

#3578 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 11, 2025

Backport PR #3585 on branch 1.11.x (Fix direct links in tutorials)

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3586

#3586 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 14, 2025

Centralize random utils

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3590

#3590 In scverse/scanpy;

· by flying-sheep was closed on Apr 22, 2025

Fix pp.scale returning a Dask Array with np.matrix chunks

Status: Merged (completed).

scverse/scanpynumber 3597

#3597 In scverse/scanpy;

· by flying-sheep was closed on Apr 17, 2025

[pre-commit.ci] pre-commit autoupdate

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3603

#3603 In scverse/scanpy;

· by pre-commit-ci was closed on Apr 25, 2025

Fix release note header levels

Area - Documentation 📒

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3547

#3547 In scverse/scanpy;

· by flying-sheep was closed on Mar 31, 2025

Backport PR #3547 on branch 1.11.x (Fix release note header levels)

Area - Documentation 📒

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3548

#3548 In scverse/scanpy;

· by meeseeksmachine was closed on Mar 31, 2025

Backport PR #3597 on branch 1.11.x (Fix pp.scale returning a Dask Array with np.matrix chunks)

Status: Merged (completed).

scverse/scanpynumber 3599

#3599 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 17, 2025

[pre-commit.ci] pre-commit autoupdate

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3566

#3566 In scverse/scanpy;

· by pre-commit-ci was closed on Apr 8, 2025

Backport PR #3379 on branch 1.11.x ((perf): remove out of core median in normalize_total)

Status: Merged (completed).

scverse/scanpynumber 3588

#3588 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 14, 2025

Backport PR #3496 on branch 1.11.x (Fix mask_obs parameter resulting in underlying data being modified)

Status: Merged (completed).

scverse/scanpynumber 3587

#3587 In scverse/scanpy;

· by meeseeksmachine was closed on Apr 14, 2025

Add Pylint lints

Development Process 🚀

needs retroactive reviewThis PR has been merged but could use some eyes on itThis PR has been merged but could use some eyes on it

Status: Merged (completed).

scverse/scanpynumber 3577

#3577 In scverse/scanpy;

· by flying-sheep was closed on Apr 11, 2025

Add BLE, C4, ISC, and PERF lints

Development Process 🚀

needs retroactive reviewThis PR has been merged but could use some eyes on itThis PR has been merged but could use some eyes on it

Status: Merged (completed).

scverse/scanpynumber 3579

#3579 In scverse/scanpy;

· by flying-sheep was closed on Apr 11, 2025

Fix direct links in tutorials

Development Process 🚀

Status: Merged (completed).

scverse/scanpynumber 3585

#3585 In scverse/scanpy;

· by flying-sheep was closed on Apr 14, 2025

fix int for shortcut

Status: Merged (completed).

scverse/scanpynumber 3461

#3461 In scverse/scanpy;

· by Intron7 was closed on May 21, 2025

Fix mask_obs parameter resulting in underlying data being modified

Status: Merged (completed).

scverse/scanpynumber 3496

#3496 In scverse/scanpy;

· by vishnumenon was closed on Apr 14, 2025