Virus Genome Analysis

Genome analysis project for identifying a mystery virus found in Vero cell culture.

Included Folders

• output/ : analysis results
• reference/ : reference viral genome files
• slurm/ : job scripts used on HPC cluster

Excluded

• seqs/ raw sequencing reads not uploaded due to size

Tools Used

• Centrifuge
• Minimap2
• Samtools
• Bcftools
• SLURM
• HCC Cluster