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11 changes: 7 additions & 4 deletions .github/release_checklist.md
Original file line number Diff line number Diff line change
@@ -1,5 +1,5 @@
Release checklist
- [ ] Check outstanding issues on JIRA and Github.
- [ ] Check outstanding issues on JIRA and GitHub.
- [ ] Check [latest documentation](https://sequali.readthedocs.io/en/latest)
looks fine.
- [ ] Create a release branch.
Expand All @@ -8,9 +8,12 @@ Release checklist
- [ ] Merge the release branch into `main`.
- [ ] Created an annotated tag with the stable version number. Include changes
from CHANGELOG.rst.
- [ ] Push tag to remote. This triggers the wheel/sdist build on github CI.
- [ ] Push tag to remote. This triggers the wheel/sdist build on GitHub CI.
- [ ] merge `main` branch back into `develop`.
- [ ] Build the new tag on readthedocs. Only build the last patch version of
each minor version. So `1.1.1` and `1.2.0` but not `1.1.0`, `1.1.1` and `1.2.0`.
- [ ] Create a new release on github.
- [ ] Update the package on bioconda.
- [ ] Create a new release on GitHub.
- [ ] Update the package on BioConda.
- [ ] Update [Galaxy wrapper](
https://github.com/galaxyproject/tools-iuc/blob/main/tools/sequali/sequali.xml
).
2 changes: 1 addition & 1 deletion pyproject.toml
Original file line number Diff line number Diff line change
Expand Up @@ -73,5 +73,5 @@ CFLAGS = "-O3 -DNDEBUG"
[tool.cibuildwheel]
test-requires = "pytest"
test-command = "pytest {project}/tests/"
skip = "*-win32 *-manylinux_i686 pp3*" # Skip 32 bit, pypy
skip = "*-win32 *-manylinux_i686 pp3* cp3??t-*" # Skip 32 bit, pypy
build-verbosity = 1
1 change: 1 addition & 0 deletions src/sequali/_qcmodule.c
Original file line number Diff line number Diff line change
Expand Up @@ -4272,6 +4272,7 @@ struct EstimatorEntry {
// 32 bits allows storing 4 billion counts. This should never overflow in practice.
uint32_t count;
};
#pragma pack()

typedef struct _DedupEstimatorStruct {
PyObject_HEAD
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4 changes: 2 additions & 2 deletions tox.ini
Original file line number Diff line number Diff line change
Expand Up @@ -36,7 +36,7 @@ commands =
twine check dist/*

[testenv:pedantic_compile]
deps=
deps=setuptools
skip_install=True
setenv=
CFLAGS=-Wall -Werror -Wpedantic
Expand All @@ -46,7 +46,7 @@ commands =
bash -c 'CC=clang python setup.py build_ext -f'

[testenv:strict_compile]
deps=
deps=setuptools
skip_install=True
setenv=
CFLAGS=-Wall -Werror
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