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Merge pull request #666 from pangenome/fix-gcc15-sdsl-build
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#196:
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Merge pull request #666 from pangenome/fix-gcc15-sdsl-build
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#966:
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fix sdsl-lite build with gcc 15 (-Wno-template-body)
build and test
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Merge pull request #663 from pangenome/fix-progress-meter-idle-wait
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Merge pull request #663 from pangenome/fix-progress-meter-idle-wait
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progress meter: signal logger via condition_variable instead of 500ms…
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#963:
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Merge pull request #662 from pangenome/perf-hot-loops
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Merge pull request #662 from pangenome/perf-hot-loops
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optimize hot output loops and per-step lookups
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Merge pull request #661 from pangenome/extract-pathmeta-guard
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#960:
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Merge pull request #661 from pangenome/extract-pathmeta-guard
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Merge pull request #660 from pangenome/extract-drop-pathless
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Merge pull request #660 from pangenome/extract-drop-pathless
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odgi: clear error instead of assert(false) on unknown path name/handle
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#957:
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position: --all-ref-positions to lift ranges into every ref path (#440)
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#956:
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position-all-ref-positions
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extract: --drop-pathless to remove nodes not covered by any path (#526)
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Merge pull request #658 from pangenome/noncompacted-hazards
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#954:
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Merge pull request #658 from pangenome/noncompacted-hazards
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#190:
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similarity: support non-compacted node IDs; fix strict compaction guards
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#953:
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noncompacted-hazards
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Merge master into noncompacted-hazards
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Merge pull request #657 from pangenome/extract-noncompacted-more
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Merge pull request #657 from pangenome/extract-noncompacted-more
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Fix node-id compaction hazards in tips/tension/bin/similarity/sort/cuda
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#950:
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