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@berman-lab Judith Berman Lab

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    11 repositories

    • DDAs

      Public
      Utilities for processing and analyzing disk diffusion assay images (DDAs).
      Python
      •1•0•7•0•Updated Jul 29, 2026Jul 29, 2026

    • transposon-pipeline

      Public
      Python
      •1•7•0•0•Updated Jun 7, 2026Jun 7, 2026

    • f200-growth-curve-plots

      Public
      Utility scripts for plotting growth curves from TECAN Infinite F200 machines
      Python
      •0•0•0•0•Updated Mar 24, 2026Mar 24, 2026

    • high-throughput-growth-curve-analyzer

      Public
      Creating graphs from the data the robots in out lab output
      Python
      •0•0•0•0•Updated Sep 30, 2024Sep 30, 2024

    • FoG-Machine

      Public
      Analysis package for the processing of Strip Diffusion Assays (SDA)
      Python
      •0•0•0•0•Updated Dec 11, 2023Dec 11, 2023

    • ymap

      Public
      YMAP - Yeast Mapping Analysis Pipeline : An online pipeline for the analysis of yeast genomic datasets.
      MATLAB
      •
      MIT License
      •6•7•35•0•Updated Feb 16, 2023Feb 16, 2023

    • SDA-grid-tool

      Public
      Script for taking raw images as outputted from a Phenobooth machine for a 384 well plate and laying grids on them to ease analysis
      Python
      •0•0•0•0•Updated Nov 9, 2022Nov 9, 2022

    • ColonyScanalyser

      Public
      An image analysis tool for measuring microorganism colony growth
      Python
      •
      GNU General Public License v3.0
      •3•0•0•0•Updated Nov 10, 2019Nov 10, 2019

    • diskImageR

      Public
      diskImageR package
      HTML
      •8•0•0•0•Updated Jul 31, 2019Jul 31, 2019

    • concat-windows

      Public
      Concat app windows version
      C#
      •0•0•0•0•Updated Nov 7, 2016Nov 7, 2016

    • concat

      Public
      CLI for concatenating files
      Python
      •0•0•0•0•Updated Nov 6, 2016Nov 6, 2016
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