Sync: BioPortal v6.1.0 release - #4

Merged

alexskr merged 92 commits into

ontoportal:masterfrom

Jul 21, 2025

Commits on Oct 15, 2024

Gemfile.lock update
alexskr
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17b2f2b

Commits on Oct 21, 2024

Gemfile.lock update
alexskr
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4255106

Commits on Oct 22, 2024

Gemfile.lock update
alexskr
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3e58995

Commits on Nov 14, 2024

Gemfile.lock update
alexskr
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Gemfile.lock update
alexskr
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095ee0f

Commits on Nov 19, 2024

Gemfile.lock update
alexskr
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Gemfile.lock update
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Gemfile.lock update
alexskr
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bd2fd90

Commits on Nov 22, 2024

Gemfile.lock update
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Gemfile.lock update
alexskr
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Commits on Dec 2, 2024

Gemfile.lock update
alexskr
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Commits on Dec 13, 2024

Gemfile.lock update
alexskr
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eda85c2
Gemfile.lock update
alexskr
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c703f13

Commits on Mar 7, 2025

Gemfile.lock update; oLD MOD
alexskr
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ruby 3.1 update
alexskr
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b622d30

Commits on Mar 11, 2025

Merge branch 'master' into develop
alexskr
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e84d5bc
remove net-ftp gem from Gemlock; its included as a dependency elsewhere
alexskr
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05515ff
Merge pull request #87 from ncbo/develop
alexskr
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6ed9668

Commits on Mar 28, 2025

pin ontologies_linked_data to v5.33.5
alexskr
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7f0139c

Commits on Apr 1, 2025

update path of the appliance version manifest
alexskr
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8b805b3
Merge pull request #88 from ncbo/develop
alexskr
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d697b7a

Commits on Apr 17, 2025

Commits on Apr 21, 2025

Rename logs directory to log for consistency with standard layout
alexskr
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Merge pull request #91 from ncbo/fix/respect-log_dir-for-log_path
alexskr
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a9b3d2a
Gemfile.lock update
alexskr
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ab6303f

Commits on Apr 22, 2025

Add rubocop in a development group
jvendetti
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80cf522

Commits on Apr 25, 2025

Update copyright year
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76c7907
Create README.md
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Add unit test status badge
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edabffd

Commits on Apr 29, 2025

Gemfile.lock update
alexskr
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30564d2
Gemfile.lock update
alexskr
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8eaa81f

Commits on Apr 30, 2025

Upgrade minitest to latest
jvendetti
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Add minitest-hooks
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Merge pull request #94 from ncbo/develop
alexskr
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043a8a0
reset branch specifier to master
alexskr
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e20cc68

Commits on May 1, 2025

Migrate test suite to Minitest 5
jvendetti
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5fd6ec0
Fix some RuboCop warnings
jvendetti
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ca8fc05

Commits on May 13, 2025

Reduce triplestore resets
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Add minitest-reporters for better console output
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Add a default rake task
jvendetti
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Skip test_scheduler_locking for now
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558469a

Commits on May 21, 2025

Merge pull request #97 from ncbo/upgrade/minitest-5
jvendetti
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110f906
Add more logging for analytics file write
jvendetti
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Add DeepWiki badge
jvendetti
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99d4586

Commits on Jun 4, 2025

fix(rake): defer Redis initialization to avoid eager load errors
alexskr
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571ab8c

Commits on Jun 6, 2025

Create cloudflare_analytics.rb
jvendetti
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94f2f80

Commits on Jun 10, 2025

Handle rate limiting with cost score and budget
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Store analytics data in Redis
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Make process_ontologies method public
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Commits on Jun 11, 2025

Add sample configuration for Cloudflare analytics
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Commits on Jun 12, 2025

Setup Cloudflare analytics as a nightly job
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Create timestamped backups before file write
jvendetti
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Commits on Jun 17, 2025

Add unit tests
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Allow real network connections for triplestore
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Fix Redis unexpected invocation error
jvendetti
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95f2a7b

Commits on Jun 23, 2025

add metadata extraction support in oLD;
alexskr
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491bc91

Commits on Jun 25, 2025

Commits on Jun 30, 2025

Commits on Jul 2, 2025

added a script that fixes datatypes for all ontologies, based on the new submission attribute definitions
mdorf
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d6e61be

Commits on Jul 3, 2025

fixes to datatype migration script that address issues with duplicate records and homepage not being fixed
mdorf
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4969a08

Commits on Jul 7, 2025

Commits on Jul 8, 2025

Commits on Jul 9, 2025

Merge branch 'master' into develop
alexskr
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0cf83d3
Gemfile update
alexskr
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cce8a9d
Merge pull request #105 from ncbo/develop
alexskr
authored
8e3e150

Commits on Jul 15, 2025

Gemfile udpate
alexskr
committed
7649705

Commits on Jul 16, 2025

Commits on Jul 17, 2025