Fixed --write_full_pae and --write_full_pde options. Fixes #585 - #602

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tomgoddard wants to merge 4 commits into

jwohlwend:mainfrom

RBVI:pae_pde_fix

Commits on Oct 24, 2025

Implemented --write_full_pae and --write_full_pde options for boltz2. Previously these options were available but ignored by the code and the PAE and PDE files were always written for boltz2 predi…
tomgoddard
committed
43f3670

Commits on Oct 27, 2025

Added --no_write_full_pae and --no_write_full_pde to documentation options table.
tomgoddard
committed
1d83d28
Try to get the options documentation table to put --write_full_pae and --no_write_full_pae on separate lines.
tomgoddard
committed
624e1e2
Fix quotation mark in options table --write_full_pde documentation.
tomgoddard
committed
b505839