Skip to content

Generify MinimumLengthFilter name #516

New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

Sign up for GitHub

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Open
amorehead wants to merge 2 commits into
base: main
Choose a base branch
from
Open

Generify MinimumLengthFilter name #516

Show file tree
Hide file tree
Changes from all commits
Commits
Show all changes
2 commits
Select commit Hold shift + click to select a range
7884f56
Generify `MinimumLengthFilter` name
amorehead Jul 29, 2025
2544cba
Update rcsb.py
amorehead Jul 29, 2025
File filter

Filter by extension

Filter by extension
Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
4 changes: 2 additions & 2 deletions scripts/process/rcsb.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -20,7 +20,7 @@
from boltz.data.filter.static.polymer import (
ClashingChainsFilter,
ConsecutiveCA,
MinimumLengthFilter,
LengthFilter,
UnknownFilter,
)
from boltz.data.types import ChainInfo, InterfaceInfo, Record, Target
Expand Down Expand Up @@ -258,7 +258,7 @@ def process(args) -> None:
# Load filters
filters = [
ExcludedLigands(),
MinimumLengthFilter(min_len=4, max_len=5000),
LengthFilter(min_len=4, max_len=5000),
UnknownFilter(),
ConsecutiveCA(max_dist=10.0),
ClashingChainsFilter(freq=0.3, dist=1.7),
Expand Down
2 changes: 1 addition & 1 deletion src/boltz/data/filter/static/polymer.py
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -9,7 +9,7 @@
from boltz.data.types import Structure


class MinimumLengthFilter(StaticFilter):
class LengthFilter(StaticFilter):
"""Filter polymers based on their length.

We use the number of resolved residues when considering
Expand Down