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1. blantyreESBL blantyreESBL Public

   Data and code repository for study aiming to understand ESBL carriage in Blantyre, Malawi

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2. .dotfiles .dotfiles Public

   Joe's dotfiles

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3. blantyreSepsis blantyreSepsis Public

   Reproducible analysis code and data for the manuscript: "A longitudinal observational study of aetiology and long-term outcomes of sepsis in Malawi revealing the key role of disseminated tuberculos…

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4. deep_sequencing deep_sequencing Public

   Code to analyse the DASSIM deep sequencing shotgun metagenomics samples

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5. TRACS-liverpool TRACS-liverpool Public

   Data cleaning and analysis for the TRACS-Liverpool study

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6. INTERCEPT_analysis INTERCEPT_analysis Public

   Scripts for the UKRI funded INTERCEPT resaerch project aiming to understand transmission of resistant bacteria in Indonesia

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