[main] Feature/save cell mask - #5

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mossishahi wants to merge 4 commits into

dpeerlab:mainfrom

mossishahi:feature/save_cell_mask

Commits on Jan 10, 2026

defined missed parameter: prediction_expansion_ratio
mossishahi
committed
95766a1

Commits on Jan 12, 2026

Add save_anndata parameter to ISTSegmentationWriter and update segment function.
mossishahi
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dfa30e1
Build polygon boundaries per cell from assigned transcripts
mossishahi
committed
2e59e4b
Add save_cell_masks parameter to ISTSegmentationWriter and update segment function. The user can now pass --save_cell_masks to save cell boundary data from segmentation output.
mossishahi
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3189c4d