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Make chromosomes optional - #2797

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fix/optionalChromosomes
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Make chromosomes optional#2797
egonw wants to merge 1 commit into
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fix/optionalChromosomes

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@egonw

@egonw egonw commented Jul 12, 2026

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Fixes #2796

Description

The previous query requires genes to be always linked to chromosomes, but SARS-CoV-2 does not have a chromosome.

Caveats

Check any of the following which apply:

  • Breaking change (fix or feature that would cause existing functionality to not work as expected)
  • This change requires a documentation update
    • I have made corresponding changes to the documentation
  • This change requires new dependencies (please list)

Testing

Provide instructions, so we can reproduce. Please also list any relevant details for your test configuration.

Checklist

  • I have commented my code, particularly in hard-to-understand areas
  • My changes generate no new warnings
  • I have not used code from external sources without attribution
  • I have considered accessibility in my implementation
  • There are no remaining debug statements (print, console.log, ...)

@egonw

egonw commented Jul 12, 2026

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Fail with Python 3.10 probably related to #2791

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Genes are not shown when the organism doesn't have chromosomes

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