SIBBiodiversitySummerSchool2026Topic4

Materials for the 2026 summer school

Codespace instance

you can access the material on a github codespace using this link: https://github.com/codespaces/new?skip_quickstart=true&machine=standardLinux32gb&repo=1223630935&ref=main&devcontainer_path=.devcontainer%2Fdevcontainer.json

Environment Setup Instructions

This course uses a Conda environment to install the required software.

1. Create the virtual environment

From the root directory of the repository, run:

conda install -n base -c conda-forge mamba
mamba env create -f Module1_AnnotationQuality/environmentT4.yml

alternatively...

python3 -m venv module1env

source module1env/bin/activate

pip install --upgrade pip

pip install -r requirements.txt