Skip to content
View BERNARDOC22's full-sized avatar
  • LACAR-CPID
  • Cariacica - Espirito Santo - Brazil

Block or report BERNARDOC22

Block user

Prevent this user from interacting with your repositories and sending you notifications. Learn more about blocking users.

You must be logged in to block users.

Maximum 250 characters. Please don’t include any personal information such as legal names or email addresses. Markdown is supported. This note will only be visible to you.
Report abuse

Contact GitHub support about this user’s behavior. Learn more about reporting abuse.

Report abuse
BERNARDOC22/README.md

Bernardo Cintra dos Santos

Ph.D. Candidate in Biotechnology (RENORBIO/UFES) · M.Sc. in Genetics and Molecular Biology

I convert large-scale sequencing data into actionable biological insight — from raw reads to genome-resolved characterizations of microbial communities.

I work at the intersection of wet-lab microbiology and computational biology, currently applying this expertise to hydrocarbon-degrading microbial communities. My research spans the full pipeline: strain isolation and cultivation, Oxford Nanopore and NGS sequencing, metagenomic binning, MAG recovery, genome annotation, and comparative genomics, using Linux, R, and Python to process and interpret datasets that inform biological decision-making.

My broader background includes machine learning applied to biological data, algal lipid-mutant screening, rumen fluid microbiome characterization, and the study of hydrolytic bacteria — providing exposure to a wide range of microbial systems relevant to industrial biotechnology, from biofuel feedstocks to enzyme discovery.

Core Competencies

  • Metagenomics — end-to-end workflows, from raw sample to functional and taxonomic profiling
  • Genome assembly & quality assessment — MAG recovery and microbial strain characterization
  • Machine learning for omics data — classification and pattern discovery in biological datasets
  • Cross-system expertise — algal lipid mutants, rumen microbiome, hydrolytic bacteria, hydrocarbon-degrading communities
  • Bench-to-bioinformatics fluency — hands-on experience generating the data, not only processing it
  • Scientific communication — data visualization and reporting in R for technical and non-technical audiences

Technical Stack

Linux R Python Oxford Nanopore NGS Jupyter Notebook

Contact

📧 cintrab77@gmail.com 💼 LinkedIn

Pinned Loading

  1. Cyanobacteria-project Cyanobacteria-project Public

    This project is about the hypothesis that symbiosis factor contributes to cyanobacterial genome expansion

    Jupyter Notebook

  2. Metabolic-approaches Metabolic-approaches Public

    Use to evaluate metabolic profile and taxonomic characterization

    Python

  3. Microalgae-project Microalgae-project Public

    This pipeline could help microalgae scientists to calibrate the OD 680 curve to evaluate algae growth and its association with a potential axenic method using a penicillin-streptomycin hybrid antib…

    Python