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BC Centre for Disease Control Public Health Laboratory

The BCCDC Public Health Laboratory is the primary public health and reference diagnostic testing facility for British Columbia.

31 followers
Vancouver, BC
https://www.bccdc.ca/publichealthlab

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ncov2019-artic-nf ncov2019-artic-nf Public

Forked from connor-lab/ncov2019-artic-nf

A Nextflow pipeline for running the ARTIC network's fieldbioinformatics tools (https://github.com/artic-network/fieldbioinformatics), with a focus on ncov2019

Nextflow 4 1
illumina-uploader illumina-uploader Public

Watch for new files in Illumina sequencer and upload to remote server

Python 4 1
mpxv-artic-nf mpxv-artic-nf Public

Nextflow 3 4
covid-qc covid-qc Public

Static site for displaying COVID-19 sequencing quality control data

Clojure 5

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Showing 10 of 140 repositories

PCR_strainer Public Forked from KevinKuchinski/PCR_strainer
A tool for assessing the inclusivity of primer and probe oligonucleotides from PCR assays against numerous reference genome sequences

BCCDC-PHL/PCR_strainer's past year of commit activity

Python 0 MIT 3 1 0 Updated Jul 18, 2026
determinator Public
Sort fastqs or split reads based on competitive mapping to multiple references through bwa or bbsplit

BCCDC-PHL/determinator's past year of commit activity

Nextflow 0 0 0 0 Updated Jul 16, 2026
auspice Public Forked from nextstrain/auspice
Web app for visualizing pathogen evolution

BCCDC-PHL/auspice's past year of commit activity

JavaScript 0 AGPL-3.0 174 0 0 Updated Jun 23, 2026
routine-sequence-qc-site Public
A site for displaying routine sequence QC data

BCCDC-PHL/routine-sequence-qc-site's past year of commit activity

Clojure 0 AGPL-3.0 0 0 0 Updated Jun 22, 2026
auto-ncov Public
Automated genomic analysis of SARS-CoV-2 sequence data

BCCDC-PHL/auto-ncov's past year of commit activity

Python 1 0 3 0 Updated Jun 22, 2026
auto-illumina-run-qc-check Public
Automated Primary Sequence QC Checks for Illumina Sequencing Runs

BCCDC-PHL/auto-illumina-run-qc-check's past year of commit activity

Python 1 0 0 0 Updated Jun 19, 2026
auto-hcv Public
Automated genomic analysis of HCV sequence data

BCCDC-PHL/auto-hcv's past year of commit activity

Python 0 MIT 1 0 0 Updated Jun 19, 2026
symlink-seqs Public
Create fastq symlinks for selected samples in sequencer output directories based on several criteria

BCCDC-PHL/symlink-seqs's past year of commit activity

Python 0 0 0 0 Updated Jun 18, 2026
routine-sequence-qc-collector Public
Collect outputs from BCCDC-PHL/routine-sequence-qc pipeline for usage by BCCDC-PHL/routine-sequence-qc-site

BCCDC-PHL/routine-sequence-qc-collector's past year of commit activity

Python 0 GPL-3.0 0 0 0 Updated Jun 17, 2026
routine-sequence-qc Public
Pipeline for running routine quality control analyses on illumina sequence data

BCCDC-PHL/routine-sequence-qc's past year of commit activity

Python 1 3 8 0 Updated Jun 16, 2026

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