mgi.report.reader/_pkgdown.yml at main · patterninstitute/mgi.report.reader · GitHub

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url: https://www.pattern.institute/mgi.report.reader/

template:
  package: chic
  bootstrap: 5

navbar:
  structure:
    left:  [intro, concepts, articles, reference, news]
    right: [search, github]
  components:
    concepts:
      text: Concepts
      menu:
        - text: Genetic Marker
          href: articles/genetic_marker.html
        - text: Representative Genomic Sequence
          href: articles/representative_sequence.html
    articles:
      text: Reports
      menu:
        - text: Mouse Genetic Markers
        - text: All Markers (MRK_List1.rpt)
          href: articles/marker_list1.html
        - text: Official Markers (MRK_List2.rpt)
          href: articles/marker_list2.html
        - text: -------
        - text: Sequence Data
        - text: Marker Coordinates (MGI_MRK_Coord.rpt)
          href: articles/marker_coordinates.html
        - text: Gene Model Coordinates (MGI_Gene_Model_Coord.rpt)
          href: articles/gene_model_coordinates.html
        - text: Sequence Coordinates (MGI_GTGUP.gff)
          href: articles/sequence_coordinates.html
        - text: GenBank, RefSeq and Ensembl IDs (MRK_Sequence.rpt)
          href: articles/genbank_refseq_ensembl_ids.html
        - text: UniProtKB Swiss-Prot and TrEMBL (MRK_SwissProt_TrEMBL.rpt)
          href: articles/swiss_trembl_ids.html
        - text: UniProtKB Swiss-Prot (MRK_SwissProt.rpt)
          href: articles/swiss_prot_ids.html
        - text: Gene Traps (MRK_GeneTrap.rpt)
          href: articles/gene_trap_ids.html
        - text: Ensembl IDs (MRK_ENSEMBL.rpt)
          href: articles/ensembl_ids.html
        - text: Ensembl/NCBI Biotype Conflicts (MGI_BioTypeConflict.rpt)
          href: articles/biotype_conflicts.html
        - text: Primer Pairs (PRB_PrimerSeq.rpt)
          href: articles/primers.html
        - text: InterPro Domains (MGI_InterProDomains.rpt)
          href: articles/interpro_domains.html

reference:
- title: MGI Reports

- subtitle: Reading Reports
  contents:
  - read_report
  - report_source
  - report_last_modified
  - report-attributes
  - report_example

- subtitle: Marker mappings
  contents:
  - symbol_to_symbol
  - symbol_to_identifier

- subtitle: Data
  contents:
  - reports
  - feature_type_definitions
  - marker_type_definitions

- subtitle: Enumerations
  contents:
  - chromosomes
  - marker_types
  - feature_types

- subtitle: Browse MGI Webserver
  contents:
  - open_marker_id_in_mgi
  - open_marker_symbol_in_mgi