diff --git a/servers/Azure.Mcp.Server/src/Resources/allowed-plugin-file-references.json b/servers/Azure.Mcp.Server/src/Resources/allowed-plugin-file-references.json
index 60ca85e120..c58fbc5b9d 100644
--- a/servers/Azure.Mcp.Server/src/Resources/allowed-plugin-file-references.json
+++ b/servers/Azure.Mcp.Server/src/Resources/allowed-plugin-file-references.json
@@ -274,6 +274,14 @@
   "azure-diagnostics\\references\\container-apps\\README.md",
   "azure-diagnostics\\references\\functions\\README.md",
   "azure-diagnostics\\references\\kql-queries.md",
+  "azure-diagnostics\\scripts\\aks-baseline.ps1",
+  "azure-diagnostics\\scripts\\aks-baseline.sh",
+  "azure-diagnostics\\scripts\\appservice-diagnostics.ps1",
+  "azure-diagnostics\\scripts\\appservice-diagnostics.sh",
+  "azure-diagnostics\\scripts\\containerapp-diagnostics.ps1",
+  "azure-diagnostics\\scripts\\containerapp-diagnostics.sh",
+  "azure-diagnostics\\scripts\\test-messaging-connectivity.ps1",
+  "azure-diagnostics\\scripts\\test-messaging-connectivity.sh",
   "azure-diagnostics\\troubleshooting\\aks\\aks-troubleshooting.md",
   "azure-diagnostics\\troubleshooting\\aks\\general-diagnostics.md",
   "azure-diagnostics\\troubleshooting\\aks\\load-balancer-and-ingress.md",
@@ -675,7 +683,6 @@
   "microsoft-foundry\\foundry-agent\\create\\create-hosted.md",
   "microsoft-foundry\\foundry-agent\\create\\create-prompt.md",
   "microsoft-foundry\\foundry-agent\\create\\quick-start-hosted.md",
-  "microsoft-foundry\\foundry-agent\\create\\references\\agentframework.md",
   "microsoft-foundry\\foundry-agent\\create\\references\\enable-incoming-a2a.md",
   "microsoft-foundry\\foundry-agent\\create\\references\\foundry-tool-catalog.md",
   "microsoft-foundry\\foundry-agent\\create\\references\\guardrails\\guardrail-api-create.md",