Issues in starting up

[ipcamit]

I think there are couple of issues in starting colabfit-tools hat i faced.

1. When I give from colbfit.tools import Dataset i get the following error:

ImportError: cannot import name 'Dataset' from 'colabfit.tools' (colabfit-tools/colabfit/tools/init.py)

Possible reason: Everything is commented out in init.py file. When I uncomment the 4th line, it can start the import.

2. Missing dependencies: it needs bson package but does not list it in requirements. May be add it too? I dont think it is standard package

I am using Python 3.7.7 on MacOS

[jvita]

When I give from colbfit.tools import Dataset i get the following error:

Thanks for pointing this out; I had changed the installation to use things like from colabfit.tools.dataset import Dataset instead of from colabfit.tools import Dataset in order to make it clearer which sub-package different classes/functions come from, but I forgot to update the README.

Missing dependencies: it needs bson package but does not list it in requirements. May be add it too? I dont think it is standard package

I will add this to the requirements list as well

[dskarls]

I think another missing requirement here might be the 'markdown' package imported in dataset.py:L4. Currently, the setup.py requirements lead to the following packages being installed directly and indirectly:

• numpy
• scipy
• cycler
• kiwisolver
• pillow
• pyparsing
• six
• python-dateutil
• matplotlib
• ase
• kim-edn
• kim-property
• tqdm
• bson
• colabfit-tools