GC overhead limit exceeded and no space left on the device, the .hic file is particularly small.

[lscnsdad]

Dear friends,
I had a troublesome problem that had been bothering me for a long time
This is my basic configuration
openjdk version "1.8.0_412"
GNU bash, version 4.2.46(2)-release (x86_64-redhat-linux-gnu)
GNU Awk 4.0.2
sort (GNU coreutils) 8.22
GNU parallel 20250222

When I first run, fasta=2.7G, mnd=365G
bash run-asm-pipeline.sh ref.fasta merged_nodups.txt

Then, I increased the memory

I realized that the way I was increasing the memory might not be right, So I modified it.

But it turned out to be the same

I've tried a few other things as well

I've tried running it on a different server, but it still doesn't work. The server I'm running now should have around 800GB of memory, and other people running the same 3d-DNA haven't had this problem before. My friend, can you tell me where I caused the mistake

I look forward to hearing from you

[lscnsdad]

This is my last result, the .hic file is particularly small.