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executable file
·108 lines (90 loc) · 6.13 KB
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{
"verbose" : true,
"use_deprecated_normalization_from_12bits" : false,
"use_alternative_denoising_on_synthetic_maps" : false,
"do_ants_transform_B1_map_to_t1wUNI_space" : true,
"do_ants_smoothing_of_B1_map_in_t1wUNI_space" : true,
"do_ants_smoothing_using_median_filtering" : false,
"is_ants_smoothing_sigma_in_spacing_units" : false,
"do_restore_bijectivity_of_qT1_along_local_B1" : true,
"do_bound_B1_to_valid_interpolation_range" : false,
"do_round_on_export" : true,
"export_quantitative_instead_of_qualitative" : false,
"export_interpolation_hypersurface_data_n_plot" : true,
"show_interpolation_hypersurface_plot" : false,
"compute_t1wUNI_DEN" : true,
"compute_t1wUNI_B1Corrected" : true,
"compute_t1wUNI_B1Corrected_DEN" : true,
"compute_qT1" : true,
"compute_qR1" : true,
"compute_EDGE" : true,
"compute_EDGE_DEN" : true,
"compute_FLAWS" : true,
"compute_FLAWS_DEN" : true,
"path_INPUT_b1_faUnit" : "/path/to/nifti/files/01_0008_tfl-b1map-sag-3mm-tar90_c32.nii.gz",
"path_INPUT_inversion_1_msUnit" : "/path/to/nifti/files/01_0023_t1-mp2r-sag-0p6-p3-cemerem-inv1_c32.nii.gz",
"path_INPUT_inversion_2_msUnit" : "/path/to/nifti/files/01_0024_t1-mp2r-sag-0p6-p3-cemerem-inv2_c32.nii.gz",
"path_INPUT_t1wUNI_dicomUnit" : "/path/to/nifti/files/01_0025_t1-mp2r-sag-0p6-p3-cemerem-uni-images_c32.nii.gz",
"path_OUTPUT_b1_processed_perthousand" : "/path/to/desired/location/out_b1_processed_relativeUnit_perThousand.nii.gz",
"path_OUTPUT_t1wUNI_DEN_dicomUnit" : "/path/to/desired/location/out_t1wUNI_DEN_dicomUnit.nii.gz",
"path_OUTPUT_t1wUNI_B1Corrected_dicomUnit" : "/path/to/desired/location/out_t1wUNI_B1Corrected_dicomUnit.nii.gz",
"path_OUTPUT_t1wUNI_B1Corrected_DEN_dicomUnit" : "/path/to/desired/location/out_t1wUNI_B1Corrected_DEN_dicomUnit.nii.gz",
"path_OUTPUT_qT1_msUnit" : "/path/to/desired/location/out_qT1_msUnit.nii.gz",
"path_OUTPUT_qR1_pksUnit" : "/path/to/desired/location/out_qR1_pksUnit.nii.gz",
"path_OUTPUT_EDGE_dicomUnit" : "/path/to/desired/location/out_EDGE_dicomUnit.nii.gz",
"path_OUTPUT_EDGE_DEN_dicomUnit" : "/path/to/desired/location/out_EDGE_DEN_dicomUnit.nii.gz",
"path_OUTPUT_FLAWS_dicomUnit" : "/path/to/desired/location/out_FLAWS_dicomUnit.nii.gz",
"path_OUTPUT_FLAWS_DEN_dicomUnit" : "/path/to/desired/location/out_FLAWS_DEN_dicomUnit.nii.gz",
"path_OUTPUT_global_mask" : "/path/to/desired/location/out_global_mask.nii.gz",
"path_OUTPUT_interpolation_hypersurface_no_ext" : "/path/to/desired/location/out_interpolant_hypersurface_plot",
"ants_interpolation_method_for_resampling" : "Linear",
"ants_smoothing_sigma" : "3x1x1",
"vref_b1_vUnit" : 247.007827759,
"vref_t1wUNI_vUnit" : 247.007827759,
"target_b1_faUnit" : 899.9,
"noise_shift" : 100.0,
"t_echo_spacing_msUnit" : 7.4,
"t_repeat_MP2RAGE_msUnit" : 5000.0,
"t_inversion1_msUnit" : 900.0,
"t_inversion2_msUnit" : 2750.0,
"fa_1_degUnit" : 6.0,
"fa_2_degUnit" : 5.0,
"inversion_efficiency" : 1.0,
"M0" : 1.0,
"edge_t_echo_spacing_msUnit" : 2.5,
"edge_t_repeat_MP2RAGE_msUnit" : 8000.0,
"edge_t_inversion1_msUnit" : 820.0,
"edge_t_inversion2_msUnit" : 1320.0,
"edge_fa_1_degUnit" : 5.0,
"edge_fa_2_degUnit" : 5.0,
"edge_inversion_efficiency" : 1.0,
"edge_M0" : 1.0,
"flaws1_t_echo_spacing_msUnit" : 7.5,
"flaws1_t_repeat_MP2RAGE_msUnit" : 8250.0,
"flaws1_t_inversion1_msUnit" : 900.0,
"flaws1_t_inversion2_msUnit" : 3700.0,
"flaws1_fa_1_degUnit" : 9.0,
"flaws1_fa_2_degUnit" : 5.0,
"flaws1_inversion_efficiency" : 1.0,
"flaws1_M0" : 1.0,
"flaws2_t_echo_spacing_msUnit" : 3.1,
"flaws2_t_repeat_MP2RAGE_msUnit" : 5000.0,
"flaws2_t_inversion1_msUnit" : 200.0,
"flaws2_t_inversion2_msUnit" : 1200.0,
"flaws2_fa_1_degUnit" : 5.0,
"flaws2_fa_2_degUnit" : 5.0,
"flaws2_inversion_efficiency" : 1.0,
"flaws2_M0" : 1.0,
"datatype" : 512,
"n_threads" : 10,
"n_before" : 64,
"n_after" : 128,
"edge_n_before" : 64,
"edge_n_after" : 128,
"flaws1_n_before" : 64,
"flaws1_n_after" : 128,
"flaws2_n_before" : 64,
"flaws2_n_after" : 128,
"array_b1_relativeUnit" : [191, 0.1, 2.0],
"array_qT1_msUnit" : [3996, 100.0, 4095.0]
}