TerminalFragments_template_example.csv

#AnalysisNum,#PassTag (any type of text num or letters),protein sequence,ions_types,maxcharge,Neutral Losses,Considering Disulfides,modifications for reduction of disulfides,number of mods per combination (max # of cys),Uniprot_offset (important for disulfide analysis),Number of disulfides (within a fragment) allow to be broken,Disulfides_ls,naturally_reduced_cys,Considering_mods,"noncys_mods (separate with "":"", no spaces)",init_tol (ppm),final_tol (ppm),AUTO_CAL
1,CaM_xcz,ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,x;c;z,8,FALSE,FALSE,,,,,,,FALSE,,150,10,TRUE
1,CaM_xcz_neutloss,ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,x;c;z,8,TRUE,FALSE,,,,,,,FALSE,,150,10,TRUE
2,CaM_xcz,ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,x;c;z,8,FALSE,FALSE,,,,,,,FALSE,,150,10,TRUE
2,CaM_xcz_neutloss,ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,x;c;z,8,TRUE,FALSE,,,,,,,FALSE,,150,10,TRUE
2,CaM_aby,ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,a;b;y,8,FALSE,FALSE,,,,,,,FALSE,,150,10,TRUE
2,CaM_aby_neutloss,ADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,a;b;y,8,TRUE,FALSE,,,,,,,FALSE,,150,10,TRUE
3,CaM_xcz,MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,x;c;z,8,FALSE,FALSE,,,,,,,FALSE,,150,10,TRUE
3,CaM_xcz_neutloss,MADQLTEEQIAEFKEAFSLFDKDGDGTITTKELGTVMRSLGQNPTEAELQDMINEVDADGNGTIDFPEFLTMMARKMKDTDSEEEIREAFRVFDKDGNGYISAAELRHVMTNLGEKLTDEEVDEMIREADIDGDGQVNYEEFVQMMTAK,x;c;z,8,TRUE,FALSE,,,,,,,FALSE,,150,10,TRUE