FastSurfer/requirements.txt at dev · Deep-MI/FastSurfer · GitHub

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#
# This file is autogenerated by pollakc from fastsurfer-dev-3c52a21.sif
# by the following command from FastSurfer:
#
#    tools/export_pip-r.sh requirements.txt fastsurfer-dev-3c52a21.sif
#
# Which ran the following command:
#    apptainer exec fastsurfer-dev-3c52a21.sif /bin/bash -c 'python --version && pip list --format=freeze --no-color --disable-pip-version-check --no-input --no-cache-dir'
#
#
# Backend-neutral pinned requirements for FastSurfer.
#
# Image was configured for cu118 using python version 3.12.12.
#
# This file pins the shared Python dependency set, but intentionally does not
# pin backend-specific PyTorch wheel variants, PyTorch index URLs, nvidia-*
# runtime packages, or triton. Select those at install time with uv's
# --torch-backend option, for example:
#
#    uv pip compile --torch-backend=cu128 requirements.txt | uv pip sync --torch-backend=cu128 -
#    uv pip compile --torch-backend=cpu requirements.txt | uv pip sync --torch-backend=cpu -
#
# To refresh this file from a container image, run:
#
#    tools/export_pip-r.sh requirements.txt fastsurfer-dev-3c52a21.sif
#
absl-py==2.4.0
annotated-doc==0.0.4
certifi==2026.4.22
charset-normalizer==3.4.7
click==8.3.3
contourpy==1.3.3
cycler==0.12.1
Deprecated==1.3.1
einops==0.8.2
filelock==3.29.0
fonttools==4.62.1
fsspec==2026.4.0
glfw==2.10.0
grpcio==1.80.0
h5py==3.16.0
humanize==4.15.0
idna==3.15
ImageIO==2.37.3
jaxtyping==0.3.9
Jinja2==3.1.6
joblib==1.5.3
kiwisolver==1.5.0
lapy==1.6.0
lazy-loader==0.5
Markdown==3.10.2
markdown-it-py==4.2.0
MarkupSafe==3.0.3
matplotlib==3.10.9
mdurl==0.1.2
meshpy==2025.1.1
monai==1.5.2
mpmath==1.3.0
multipledispatch==1.0.0
narwhals==2.21.0
networkx==3.6.1
neurolit==0.6.1
neuroreg==0.6.2
nibabel==5.4.2
numpy==2.4.4
packaging==26.2
pandas==3.0.3
pillow==12.2.0
pip==26.1.1
platformdirs==4.9.6
plotly==6.7.0
protobuf==7.34.1
psutil==7.2.2
Pygments==2.20.0
PyOpenGL==3.1.10
pyparsing==3.3.2
pyrr==0.10.3
python-dateutil==2.9.0.post0
PyYAML==6.0.3
requests==2.34.1
rich==15.0.0
scikit-image==0.26.0
scikit-learn==1.8.0
scipy==1.17.1
setuptools==82.0.1
shellingham==1.5.4
simpleitk==2.5.5
six==1.17.0
sympy==1.14.0
tensorboard==2.20.0
tensorboard-data-server==0.7.2
threadpoolctl==3.6.0
tifffile==2026.5.2
torch==2.7.1
torchio==1.2.0
torchvision==0.22.1
tqdm==4.67.3
typer==0.25.1
typing_extensions==4.15.0
urllib3==2.7.0
wadler_lindig==0.1.7
Werkzeug==3.1.8
whippersnappy==2.1.0
wrapt==2.1.2
yacs==0.1.8